3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GACUG*CAUAG*UGAUU*AUUAAC
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6WOO_010 not in the Motif Atlas
Homologous match to J4_8P9A_017
Geometric discrepancy: 0.0598
The information below is about J4_8P9A_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_07509.2
Basepair signature
cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
Number of instances in this motif group
3

Unit IDs

6WOO|1|5|G|2130
6WOO|1|5|A|2131
6WOO|1|5|C|2132
6WOO|1|5|U|2133
6WOO|1|5|G|2134
*
6WOO|1|5|C|2146
6WOO|1|5|A|2147
6WOO|1|5|U|2148
6WOO|1|5|A|2149
6WOO|1|5|G|2150
*
6WOO|1|5|U|2186
6WOO|1|5|G|2187
6WOO|1|5|A|2188
6WOO|1|5|U|2189
6WOO|1|5|U|2190
*
6WOO|1|5|A|2317
6WOO|1|5|U|2318
6WOO|1|5|U|2319
6WOO|1|5|A|2320
6WOO|1|5|A|2321
6WOO|1|5|C|2322

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain A
uL2
Chain n
eL41
Chain p
eL43

Coloring options:


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