J4_6WOO_011
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CGGG*CUCUUAAGGUAG*UGAAUG
- Length
- 25 nucleotides
- Bulged bases
- 6WOO|1|5|G|2249, 6WOO|1|5|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|C|2192
6WOO|1|5|U|2193
6WOO|1|5|G|2194
*
6WOO|1|5|C|2248
6WOO|1|5|G|2249
6WOO|1|5|G|2250
6WOO|1|5|G|2251
*
6WOO|1|5|C|2265
6WOO|1|5|U|2266
6WOO|1|5|C|2267
6WOO|1|5|U|2268
6WOO|1|5|U|2269
6WOO|1|5|A|2270
6WOO|1|5|A|2271
6WOO|1|5|G|2272
6WOO|1|5|G|2273
6WOO|1|5|U|2274
6WOO|1|5|A|2275
6WOO|1|5|G|2276
*
6WOO|1|5|U|2310
6WOO|1|5|G|2311
6WOO|1|5|A|2312
6WOO|1|5|A|2313
6WOO|1|5|U|2314
6WOO|1|5|G|2315
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 1
- eIF5B
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain n
- eL41
Coloring options: