J4_6WQQ_003
3D structure
- PDB id
- 6WQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGUAG*CGAGU*GCGUUUAG
- Length
- 22 nucleotides
- Bulged bases
- 6WQQ|1|1|U|698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WQQ_003 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.4412
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69347.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6WQQ|1|1|C|644
6WQQ|1|1|A|645
6WQQ|1|1|A|646
6WQQ|1|1|G|647
*
6WQQ|1|1|C|669
6WQQ|1|1|G|670
6WQQ|1|1|U|671
6WQQ|1|1|A|672
6WQQ|1|1|G|673
*
6WQQ|1|1|C|680
6WQQ|1|1|G|681
6WQQ|1|1|A|682
6WQQ|1|1|G|683
6WQQ|1|1|U|684
*
6WQQ|1|1|G|694
6WQQ|1|1|C|695
6WQQ|1|1|G|696
6WQQ|1|1|U|697
6WQQ|1|1|U|698
6WQQ|1|1|U|699
6WQQ|1|1|A|700
6WQQ|1|1|G|701
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain Q
- 50S ribosomal protein L35
- Chain S
- 50S ribosomal protein L4
- Chain X
- 50S ribosomal protein L15
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