J4_6WRS_006

3D structure

PDB id

6WRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WRS_006 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1032

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WRS|1|1|G|1799
6WRS|1|1|A|1800
6WRS|1|1|C|1801
6WRS|1|1|U|1802
6WRS|1|1|G|1803
*
6WRS|1|1|C|1815
6WRS|1|1|A|1816
6WRS|1|1|C|1817
6WRS|1|1|A|1818
6WRS|1|1|G|1819
*
6WRS|1|1|U|1854
6WRS|1|1|G|1855
6WRS|1|1|A|1856
6WRS|1|1|C|1857
*
6WRS|1|1|G|2002
6WRS|1|1|U|2003
6WRS|1|1|A|2004
6WRS|1|1|A|2005
6WRS|1|1|C|2006

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2