J4_6WYV_012

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

6WYV|1|I|A|2288, 6WYV|1|I|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WYV_012 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1435

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

6WYV|1|I|C|2285
6WYV|1|I|G|2286
6WYV|1|I|A|2287
6WYV|1|I|A|2288
6WYV|1|I|G|2289
*
6WYV|1|I|U|2343
6WYV|1|I|U|2344
6WYV|1|I|G|2345
6WYV|1|I|A|2346
6WYV|1|I|C|2347
*
6WYV|1|I|G|2370
6WYV|1|I|G|2371
6WYV|1|I|U|2372
*
6WYV|1|I|A|2381
6WYV|1|I|G|2382
6WYV|1|I|G|2383

Current chains

Chain I

23S ribosomal RNA

Nearby chains