J4_6X9Q_014
3D structure
- PDB id
- 6X9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6X9Q|1|a|A|2288, 6X9Q|1|a|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6X9Q_014 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0831
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6X9Q|1|a|C|2285
6X9Q|1|a|G|2286
6X9Q|1|a|A|2287
6X9Q|1|a|A|2288
6X9Q|1|a|G|2289
*
6X9Q|1|a|U|2343
6X9Q|1|a|U|2344
6X9Q|1|a|G|2345
6X9Q|1|a|A|2346
6X9Q|1|a|C|2347
*
6X9Q|1|a|G|2370
6X9Q|1|a|G|2371
6X9Q|1|a|U|2372
*
6X9Q|1|a|A|2381
6X9Q|1|a|G|2382
6X9Q|1|a|G|2383
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L27
- Chain k
- 50S ribosomal protein L33
- Chain o
- 50S ribosomal protein L35
- Chain x
- 50S ribosomal protein L18
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