3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
6XDR|1|a|A|2288, 6XDR|1|a|G|2382
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XDR_014 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.0832
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6XDR|1|a|C|2285
6XDR|1|a|G|2286
6XDR|1|a|A|2287
6XDR|1|a|A|2288
6XDR|1|a|G|2289
*
6XDR|1|a|U|2343
6XDR|1|a|U|2344
6XDR|1|a|G|2345
6XDR|1|a|A|2346
6XDR|1|a|C|2347
*
6XDR|1|a|G|2370
6XDR|1|a|G|2371
6XDR|1|a|U|2372
*
6XDR|1|a|A|2381
6XDR|1|a|G|2382
6XDR|1|a|G|2383

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
50S ribosomal protein L27
Chain k
50S ribosomal protein L33
Chain o
50S ribosomal protein L35
Chain x
50S ribosomal protein L18

Coloring options:


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