J4_6XE0_002

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6XE0|1|W|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XE0_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1884

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6XE0|1|W|G|142
6XE0|1|W|A|143
6XE0|1|W|G|144
*
6XE0|1|W|C|178
6XE0|1|W|A|179
6XE0|1|W|U|180
6XE0|1|W|A|181
6XE0|1|W|A|182
6XE0|1|W|C|183
6XE0|1|W|G|184
*
6XE0|1|W|C|193
6XE0|1|W|C|194
6XE0|1|W|A|195
6XE0|1|W|A|196
6XE0|1|W|A|197
6XE0|1|W|G|198
*
6XE0|1|W|U|219
6XE0|1|W|G|220
6XE0|1|W|C|221

Current chains

Chain W

16s rRNA

Nearby chains

Chain T

30S ribosomal protein S20