J4_6XHV_028

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHV_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1219

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6XHV|1|2a|G|142
6XHV|1|2a|A|143
6XHV|1|2a|G|144
*
6XHV|1|2a|C|178
6XHV|1|2a|A|179
6XHV|1|2a|U|180
6XHV|1|2a|G|181
6XHV|1|2a|U|182
6XHV|1|2a|G|183
*
6XHV|1|2a|C|194
6XHV|1|2a|A|195
6XHV|1|2a|A|196
6XHV|1|2a|A|197
6XHV|1|2a|G|198
*
6XHV|1|2a|C|219
6XHV|1|2a|G|220
6XHV|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20