J4_6XHW_028

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHW_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0917

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6XHW|1|2a|G|142
6XHW|1|2a|A|143
6XHW|1|2a|G|144
*
6XHW|1|2a|C|178
6XHW|1|2a|A|179
6XHW|1|2a|U|180
6XHW|1|2a|G|181
6XHW|1|2a|U|182
6XHW|1|2a|G|183
*
6XHW|1|2a|C|194
6XHW|1|2a|A|195
6XHW|1|2a|A|196
6XHW|1|2a|A|197
6XHW|1|2a|G|198
*
6XHW|1|2a|C|219
6XHW|1|2a|G|220
6XHW|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20