J4_6XHY_005
3D structure
- PDB id
- 6XHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6XHY|1|1A|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XHY_005 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.0612
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
6XHY|1|1A|U|1313
6XHY|1|1A|C|1314
*
6XHY|1|1A|G|1338
6XHY|1|1A|G|1339
6XHY|1|1A|U|1340
6XHY|1|1A|U|1341
6XHY|1|1A|A|1342
6XHY|1|1A|G|1343
*
6XHY|1|1A|C|1404
6XHY|1|1A|U|1405
*
6XHY|1|1A|A|1597
6XHY|1|1A|C|1598
6XHY|1|1A|C|1599
6XHY|1|1A|C|1600
6XHY|1|1A|G|1601
6XHY|1|1A|U|1602
6XHY|1|1A|A|1603
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1X
- 50S ribosomal protein L23
Coloring options: