J4_6XHY_028

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHY_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0958

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6XHY|1|2a|G|142
6XHY|1|2a|A|143
6XHY|1|2a|G|144
*
6XHY|1|2a|C|178
6XHY|1|2a|A|179
6XHY|1|2a|U|180
6XHY|1|2a|G|181
6XHY|1|2a|U|182
6XHY|1|2a|G|183
*
6XHY|1|2a|C|194
6XHY|1|2a|A|195
6XHY|1|2a|A|196
6XHY|1|2a|A|197
6XHY|1|2a|G|198
*
6XHY|1|2a|C|219
6XHY|1|2a|G|220
6XHY|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20