J4_6XII_006

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6XII|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XII_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6XII|1|a|C|268
6XII|1|a|C|269
*
6XII|1|a|G|370
6XII|1|a|A|371
6XII|1|a|G|372
6XII|1|a|U|373
6XII|1|a|A|374
6XII|1|a|G|375
*
6XII|1|a|U|399
6XII|1|a|G|400
6XII|1|a|A|401
6XII|1|a|A|402
6XII|1|a|U|403
6XII|1|a|A|404
6XII|1|a|U|405
6XII|1|a|G|406
*
6XII|1|a|C|421
6XII|1|a|A|422
6XII|1|a|A|423
6XII|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9