3D structure

PDB id
6XIR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UC*GAGUCG*CUAAGUG*UAAA
Length
19 nucleotides
Bulged bases
6XIR|1|1|U|298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XIR_001 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1276
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6XIR|1|1|U|112
6XIR|1|1|C|113
*
6XIR|1|1|G|267
6XIR|1|1|A|268
6XIR|1|1|G|269
6XIR|1|1|U|270
6XIR|1|1|C|271
6XIR|1|1|G|272
*
6XIR|1|1|C|293
6XIR|1|1|U|294
6XIR|1|1|A|295
6XIR|1|1|A|296
6XIR|1|1|G|297
6XIR|1|1|U|298
6XIR|1|1|G|299
*
6XIR|1|1|U|316
6XIR|1|1|A|317
6XIR|1|1|A|318
6XIR|1|1|A|319

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain L
60S ribosomal protein L13-A
Chain N
60S ribosomal protein L15-A
Chain h
60S ribosomal protein L35-A
Chain i
60S ribosomal protein L36-A

Coloring options:


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