J4_6XIR_001
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 6XIR|1|1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XIR_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1276
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6XIR|1|1|U|112
6XIR|1|1|C|113
*
6XIR|1|1|G|267
6XIR|1|1|A|268
6XIR|1|1|G|269
6XIR|1|1|U|270
6XIR|1|1|C|271
6XIR|1|1|G|272
*
6XIR|1|1|C|293
6XIR|1|1|U|294
6XIR|1|1|A|295
6XIR|1|1|A|296
6XIR|1|1|G|297
6XIR|1|1|U|298
6XIR|1|1|G|299
*
6XIR|1|1|U|316
6XIR|1|1|A|317
6XIR|1|1|A|318
6XIR|1|1|A|319
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
Coloring options: