J4_6XIR_012
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCC*GA
- Length
- 16 nucleotides
- Bulged bases
- 6XIR|1|AX|U|8, 6XIR|1|AX|U|47, 6XIR|1|AX|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|AX|U|7
6XIR|1|AX|U|8
6XIR|1|AX|A|9
6XIR|1|AX|G|10
*
6XIR|1|AX|C|25
6XIR|1|AX|G|26
6XIR|1|AX|C|27
*
6XIR|1|AX|G|43
6XIR|1|AX|A|44
6XIR|1|AX|G|45
6XIR|1|AX|G|46
6XIR|1|AX|U|47
6XIR|1|AX|C|48
6XIR|1|AX|C|49
*
6XIR|1|AX|G|65
6XIR|1|AX|A|66
Current chains
- Chain AX
- Transfer RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain o
- 60S ribosomal protein L42-A
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