J4_6XQD_012

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XQD_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1243

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6XQD|1|1a|G|142
6XQD|1|1a|A|143
6XQD|1|1a|G|144
*
6XQD|1|1a|C|178
6XQD|1|1a|A|179
6XQD|1|1a|U|180
6XQD|1|1a|G|181
6XQD|1|1a|U|182
6XQD|1|1a|G|183
*
6XQD|1|1a|C|194
6XQD|1|1a|A|195
6XQD|1|1a|A|196
6XQD|1|1a|A|197
6XQD|1|1a|G|198
*
6XQD|1|1a|C|219
6XQD|1|1a|G|220
6XQD|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20