J4_6XQD_019

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

6XQD|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XQD_019 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0693

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6XQD|1|2A|U|1313
6XQD|1|2A|C|1314
*
6XQD|1|2A|G|1338
6XQD|1|2A|G|1339
6XQD|1|2A|U|1340
6XQD|1|2A|U|1341
6XQD|1|2A|A|1342
6XQD|1|2A|G|1343
*
6XQD|1|2A|C|1404
6XQD|1|2A|U|1405
*
6XQD|1|2A|A|1597
6XQD|1|2A|C|1598
6XQD|1|2A|C|1599
6XQD|1|2A|C|1600
6XQD|1|2A|G|1601
6XQD|1|2A|U|1602
6XQD|1|2A|A|1603

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23