J4_6XYW_003

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XYW_003 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1239

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6XYW|1|1|G|2089
6XYW|1|1|A|2090
6XYW|1|1|C|2091
6XYW|1|1|U|2092
6XYW|1|1|G|2093
*
6XYW|1|1|C|2105
6XYW|1|1|A|2106
6XYW|1|1|C|2107
6XYW|1|1|A|2108
6XYW|1|1|G|2109
*
6XYW|1|1|U|2144
6XYW|1|1|G|2145
6XYW|1|1|A|2146
6XYW|1|1|C|2147
*
6XYW|1|1|G|2286
6XYW|1|1|U|2287
6XYW|1|1|A|2288
6XYW|1|1|A|2289
6XYW|1|1|C|2290

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Aa

60S ribosomal protein L2, mitochondrial

Chain Ab

Expressed protein