J4_6XZ7_008

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZ7_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0413

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6XZ7|1|A|A|1772
6XZ7|1|A|A|1773
6XZ7|1|A|C|1774
6XZ7|1|A|U|1775
6XZ7|1|A|G|1776
*
6XZ7|1|A|C|1788
6XZ7|1|A|A|1789
6XZ7|1|A|C|1790
6XZ7|1|A|A|1791
6XZ7|1|A|G|1792
*
6XZ7|1|A|U|1827
6XZ7|1|A|G|1828
6XZ7|1|A|A|1829
6XZ7|1|A|C|1830
*
6XZ7|1|A|G|1975
6XZ7|1|A|U|1976
6XZ7|1|A|A|1977
6XZ7|1|A|A|1978
6XZ7|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2