J4_6XZA_009

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6XZA|1|A2|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZA_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0408

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6XZA|1|A2|U|1313
6XZA|1|A2|C|1314
*
6XZA|1|A2|G|1338
6XZA|1|A2|G|1339
6XZA|1|A2|U|1340
6XZA|1|A2|G|1341
6XZA|1|A2|A|1342
6XZA|1|A2|G|1343
*
6XZA|1|A2|C|1404
6XZA|1|A2|U|1405
*
6XZA|1|A2|A|1597
6XZA|1|A2|A|1598
6XZA|1|A2|U|1599
6XZA|1|A2|C|1600
6XZA|1|A2|G|1601
6XZA|1|A2|U|1602
6XZA|1|A2|A|1603

Current chains

Chain A2

23S rRNA

Nearby chains

Chain T2

50S ribosomal protein L23

Chain c2

50S ribosomal protein L34