J4_6XZB_011

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZB_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0395

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6XZB|1|A2|A|1772
6XZB|1|A2|A|1773
6XZB|1|A2|C|1774
6XZB|1|A2|U|1775
6XZB|1|A2|G|1776
*
6XZB|1|A2|C|1788
6XZB|1|A2|A|1789
6XZB|1|A2|C|1790
6XZB|1|A2|A|1791
6XZB|1|A2|G|1792
*
6XZB|1|A2|U|1827
6XZB|1|A2|G|1828
6XZB|1|A2|A|1829
6XZB|1|A2|C|1830
*
6XZB|1|A2|G|1975
6XZB|1|A2|U|1976
6XZB|1|A2|A|1977
6XZB|1|A2|A|1978
6XZB|1|A2|U|1979

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2