3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
6XZB|1|A2|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XZB_013 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.0542
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6XZB|1|A2|C|2285
6XZB|1|A2|G|2286
6XZB|1|A2|A|2287
6XZB|1|A2|A|2288
6XZB|1|A2|G|2289
*
6XZB|1|A2|U|2343
6XZB|1|A2|U|2344
6XZB|1|A2|G|2345
6XZB|1|A2|A|2346
6XZB|1|A2|C|2347
*
6XZB|1|A2|G|2370
6XZB|1|A2|G|2371
6XZB|1|A2|U|2372
*
6XZB|1|A2|A|2381
6XZB|1|A2|G|2382
6XZB|1|A2|G|2383

Current chains

Chain A2
23S rRNA

Nearby chains

Chain O2
50S ribosomal protein L18
Chain W2
50S ribosomal protein L27
Chain b2
50S ribosomal protein L33
Chain d2
50S ribosomal protein L35

Coloring options:


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