J4_6Y69_007

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Y69_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0512

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6Y69|1|A|A|1772
6Y69|1|A|A|1773
6Y69|1|A|C|1774
6Y69|1|A|U|1775
6Y69|1|A|G|1776
*
6Y69|1|A|C|1788
6Y69|1|A|A|1789
6Y69|1|A|C|1790
6Y69|1|A|A|1791
6Y69|1|A|G|1792
*
6Y69|1|A|U|1827
6Y69|1|A|G|1828
6Y69|1|A|A|1829
6Y69|1|A|C|1830
*
6Y69|1|A|G|1975
6Y69|1|A|U|1976
6Y69|1|A|A|1977
6Y69|1|A|A|1978
6Y69|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2