J4_6YAM_002
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6YAM|1|2|G|397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YAM_002 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1509
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YAM|1|2|C|98
6YAM|1|2|A|99
6YAM|1|2|U|100
6YAM|1|2|U|101
6YAM|1|2|A|102
6YAM|1|2|A|103
6YAM|1|2|A|104
6YAM|1|2|U|105
6YAM|1|2|C|106
*
6YAM|1|2|G|345
6YAM|1|2|C|346
6YAM|1|2|C|347
*
6YAM|1|2|G|395
6YAM|1|2|U|396
6YAM|1|2|G|397
6YAM|1|2|A|398
6YAM|1|2|C|399
*
6YAM|1|2|G|421
6YAM|1|2|G|422
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein eS4
- Chain K
- 40S ribosomal protein eS8
- Chain N
- 40S ribosomal protein uS17
- Chain Z
- 40S ribosomal protein uS12
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