J4_6YBW_002

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAG*CGAAAG*CCA(PSU)AAACGAUG*UU

Length

23 nucleotides

Bulged bases

6YBW|1|A|A|672, 6YBW|1|A|A|1083, 6YBW|1|A|C|1085, 6YBW|1|A|A|1087

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YBW_002 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.1268

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6YBW|1|A|A|671
6YBW|1|A|A|672
6YBW|1|A|G|673
*
6YBW|1|A|C|1032
6YBW|1|A|G|1033
6YBW|1|A|A|1034
6YBW|1|A|A|1035
6YBW|1|A|A|1036
6YBW|1|A|G|1037
*
6YBW|1|A|C|1078
6YBW|1|A|C|1079
6YBW|1|A|A|1080
6YBW|1|A|PSU|1081
6YBW|1|A|A|1082
6YBW|1|A|A|1083
6YBW|1|A|A|1084
6YBW|1|A|C|1085
6YBW|1|A|G|1086
6YBW|1|A|A|1087
6YBW|1|A|U|1088
6YBW|1|A|G|1089
*
6YBW|1|A|U|1160
6YBW|1|A|U|1161

Current chains

Chain A

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain B

40S ribosomal protein S11

Chain E

40S ribosomal protein S23

Chain I

40S ribosomal protein S13

Chain J

40S ribosomal protein S15a

Chain P

40S ribosomal protein S14

Chain Q

40S ribosomal protein S26

Chain y

Eukaryotic translation initiation factor 3 subunit C