J4_6YEF_005

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

6YEF|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YEF_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0798

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6YEF|1|A|G|1347
6YEF|1|A|U|1348
6YEF|1|A|U|1349
6YEF|1|A|U|1350
6YEF|1|A|C|1351
*
6YEF|1|A|G|1375
6YEF|1|A|G|1376
6YEF|1|A|U|1377
6YEF|1|A|U|1378
6YEF|1|A|A|1379
6YEF|1|A|G|1380
*
6YEF|1|A|C|1441
6YEF|1|A|C|1442
*
6YEF|1|A|G|1641
6YEF|1|A|C|1642
6YEF|1|A|C|1643
6YEF|1|A|C|1644
6YEF|1|A|G|1645
6YEF|1|A|U|1646
6YEF|1|A|A|1647
6YEF|1|A|C|1648

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain W

50S ribosomal protein L23