J4_6YEF_007

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YEF_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0728

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6YEF|1|A|G|1799
6YEF|1|A|A|1800
6YEF|1|A|C|1801
6YEF|1|A|U|1802
6YEF|1|A|G|1803
*
6YEF|1|A|C|1815
6YEF|1|A|A|1816
6YEF|1|A|C|1817
6YEF|1|A|A|1818
6YEF|1|A|G|1819
*
6YEF|1|A|U|1854
6YEF|1|A|G|1855
6YEF|1|A|A|1856
6YEF|1|A|C|1857
*
6YEF|1|A|G|2002
6YEF|1|A|U|2003
6YEF|1|A|A|2004
6YEF|1|A|A|2005
6YEF|1|A|C|2006

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2