J4_6YEF_009

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

6YEF|1|A|A|2315, 6YEF|1|A|G|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YEF_009 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1369

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

6YEF|1|A|C|2312
6YEF|1|A|A|2313
6YEF|1|A|A|2314
6YEF|1|A|A|2315
6YEF|1|A|G|2316
*
6YEF|1|A|U|2370
6YEF|1|A|U|2371
6YEF|1|A|G|2372
6YEF|1|A|A|2373
6YEF|1|A|C|2374
*
6YEF|1|A|G|2397
6YEF|1|A|G|2398
6YEF|1|A|G|2399
*
6YEF|1|A|C|2408
6YEF|1|A|G|2409
6YEF|1|A|G|2410

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L33 2

Chain 7

50S ribosomal protein L35

Chain Z

50S ribosomal protein L27