J4_6YHS_007
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AACUG*CAUAG*UGAU*AUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YHS_007 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0611
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YHS|1|1|A|1761
6YHS|1|1|A|1762
6YHS|1|1|C|1763
6YHS|1|1|U|1764
6YHS|1|1|G|1765
*
6YHS|1|1|C|1777
6YHS|1|1|A|1778
6YHS|1|1|U|1779
6YHS|1|1|A|1780
6YHS|1|1|G|1781
*
6YHS|1|1|U|1816
6YHS|1|1|G|1817
6YHS|1|1|A|1818
6YHS|1|1|U|1819
*
6YHS|1|1|A|1964
6YHS|1|1|U|1965
6YHS|1|1|A|1966
6YHS|1|1|A|1967
6YHS|1|1|U|1968
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
Coloring options: