J4_6YHS_009
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAG*UUAAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6YHS|1|1|A|2277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YHS_009 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0891
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YHS|1|1|C|2274
6YHS|1|1|G|2275
6YHS|1|1|A|2276
6YHS|1|1|A|2277
6YHS|1|1|G|2278
*
6YHS|1|1|U|2332
6YHS|1|1|U|2333
6YHS|1|1|A|2334
6YHS|1|1|A|2335
6YHS|1|1|C|2336
*
6YHS|1|1|G|2359
6YHS|1|1|G|2360
6YHS|1|1|U|2361
*
6YHS|1|1|A|2370
6YHS|1|1|G|2371
6YHS|1|1|G|2372
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L18
- Chain S
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L33
- Chain a
- 50S ribosomal protein L35
Coloring options: