3D structure

PDB id
6YLY (explore in PDB, NAKB, or RNA 3D Hub)
Description
pre-60S State NE2 (TAP-Flag-Nop53)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUAUG*CGUC*GAG*CGUGUG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6YLY_002 not in the Motif Atlas
Homologous match to J4_8P9A_013
Geometric discrepancy: 0.1535
The information below is about J4_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_43318.1
Basepair signature
cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6YLY|1|1|C|185
6YLY|1|1|U|186
6YLY|1|1|A|187
6YLY|1|1|U|188
6YLY|1|1|G|189
*
6YLY|1|1|C|205
6YLY|1|1|G|206
6YLY|1|1|U|207
6YLY|1|1|C|208
*
6YLY|1|1|G|212
6YLY|1|1|A|213
6YLY|1|1|G|214
*
6YLY|1|1|C|226
6YLY|1|1|G|227
6YLY|1|1|U|228
6YLY|1|1|G|229
6YLY|1|1|U|230
6YLY|1|1|G|231

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 3
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S ribosomal protein L4-A
Chain Y
60S ribosomal protein L26-A

Coloring options:


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