J4_6YPU_001

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6YPU|1|2|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YPU_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2172

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6YPU|1|2|G|111
6YPU|1|2|A|112
6YPU|1|2|G|113
6YPU|1|2|U|114
6YPU|1|2|A|115
6YPU|1|2|A|116
6YPU|1|2|U|117
6YPU|1|2|G|118
*
6YPU|1|2|U|235
6YPU|1|2|C|236
*
6YPU|1|2|G|282
6YPU|1|2|U|283
6YPU|1|2|A|284
6YPU|1|2|G|285
*
6YPU|1|2|C|307
6YPU|1|2|C|308

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17