J4_6YPU_002

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CAUACGU*AGAAAG*CGC

Length

19 nucleotides

Bulged bases

6YPU|1|2|A|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YPU_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.4405

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6YPU|1|2|G|138
6YPU|1|2|U|139
6YPU|1|2|G|140
*
6YPU|1|2|C|174
6YPU|1|2|A|175
6YPU|1|2|U|176
6YPU|1|2|A|177
6YPU|1|2|C|178
6YPU|1|2|G|179
6YPU|1|2|U|180
*
6YPU|1|2|A|189
6YPU|1|2|G|190
6YPU|1|2|A|191
6YPU|1|2|A|192
6YPU|1|2|A|193
6YPU|1|2|G|194
*
6YPU|1|2|C|215
6YPU|1|2|G|216
6YPU|1|2|C|217

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain u

30S ribosomal protein S20