J4_6YS3_008

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YS3_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0535

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6YS3|1|b|A|1774
6YS3|1|b|A|1775
6YS3|1|b|C|1776
6YS3|1|b|U|1777
6YS3|1|b|G|1778
*
6YS3|1|b|C|1790
6YS3|1|b|A|1791
6YS3|1|b|C|1792
6YS3|1|b|A|1793
6YS3|1|b|G|1794
*
6YS3|1|b|U|1829
6YS3|1|b|G|1830
6YS3|1|b|A|1831
6YS3|1|b|C|1832
*
6YS3|1|b|G|1979
6YS3|1|b|U|1980
6YS3|1|b|A|1981
6YS3|1|b|A|1982
6YS3|1|b|U|1983

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2