J4_6YS3_010
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6YS3|1|b|A|2292, 6YS3|1|b|G|2386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YS3_010 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0919
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YS3|1|b|C|2289
6YS3|1|b|G|2290
6YS3|1|b|A|2291
6YS3|1|b|A|2292
6YS3|1|b|G|2293
*
6YS3|1|b|U|2347
6YS3|1|b|U|2348
6YS3|1|b|G|2349
6YS3|1|b|A|2350
6YS3|1|b|C|2351
*
6YS3|1|b|G|2374
6YS3|1|b|G|2375
6YS3|1|b|U|2376
*
6YS3|1|b|A|2385
6YS3|1|b|G|2386
6YS3|1|b|G|2387
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain o
- 50S ribosomal protein L18
- Chain y
- 50S ribosomal protein L27
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