3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
6YST|1|A|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6YST_009 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.0875
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6YST|1|A|C|2285
6YST|1|A|G|2286
6YST|1|A|A|2287
6YST|1|A|A|2288
6YST|1|A|G|2289
*
6YST|1|A|U|2343
6YST|1|A|U|2344
6YST|1|A|G|2345
6YST|1|A|A|2346
6YST|1|A|C|2347
*
6YST|1|A|G|2370
6YST|1|A|G|2371
6YST|1|A|U|2372
*
6YST|1|A|A|2381
6YST|1|A|G|2382
6YST|1|A|G|2383

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27

Coloring options:


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