J4_6YSU_007

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YSU_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0795

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6YSU|1|A|A|1772
6YSU|1|A|A|1773
6YSU|1|A|C|1774
6YSU|1|A|U|1775
6YSU|1|A|G|1776
*
6YSU|1|A|C|1788
6YSU|1|A|A|1789
6YSU|1|A|C|1790
6YSU|1|A|A|1791
6YSU|1|A|G|1792
*
6YSU|1|A|U|1827
6YSU|1|A|G|1828
6YSU|1|A|A|1829
6YSU|1|A|C|1830
*
6YSU|1|A|G|1975
6YSU|1|A|U|1976
6YSU|1|A|A|1977
6YSU|1|A|A|1978
6YSU|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2