J4_6Z1P_005

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACUG*CAUAA*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Z1P_005 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.109

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6Z1P|1|Ab|G|1499
6Z1P|1|Ab|A|1500
6Z1P|1|Ab|C|1501
6Z1P|1|Ab|U|1502
6Z1P|1|Ab|G|1503
*
6Z1P|1|Ab|C|1515
6Z1P|1|Ab|A|1516
6Z1P|1|Ab|U|1517
6Z1P|1|Ab|A|1518
6Z1P|1|Ab|A|1519
*
6Z1P|1|Ab|U|1554
6Z1P|1|Ab|G|1555
6Z1P|1|Ab|A|1556
6Z1P|1|Ab|C|1557
*
6Z1P|1|Ab|G|1694
6Z1P|1|Ab|U|1695
6Z1P|1|Ab|A|1696
6Z1P|1|Ab|A|1697
6Z1P|1|Ab|C|1698

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2

Chain BC

mS38