J4_6Z1P_013
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAAUA*UUGAU*AGG*CUG
- Length
- 16 nucleotides
- Bulged bases
- 6Z1P|1|Ab|U|1982
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Z1P_013 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.173
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Z1P|1|Ab|U|1979
6Z1P|1|Ab|A|1980
6Z1P|1|Ab|A|1981
6Z1P|1|Ab|U|1982
6Z1P|1|Ab|A|1983
*
6Z1P|1|Ab|U|2037
6Z1P|1|Ab|U|2038
6Z1P|1|Ab|G|2039
6Z1P|1|Ab|A|2040
6Z1P|1|Ab|U|2041
*
6Z1P|1|Ab|A|2064
6Z1P|1|Ab|G|2065
6Z1P|1|Ab|G|2066
*
6Z1P|1|Ab|C|2075
6Z1P|1|Ab|U|2076
6Z1P|1|Ab|G|2077
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AA
- 50S ribosomal protein L27
- Chain AE
- 50S ribosomal protein L33
- Chain AF
- bL35m
- Chain AH
- mL40
- Chain AO
- mL64
- Chain AR
- mL103
- Chain Aq
- Ribosomal protein L15, putative
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