J4_6Z6J_001
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 6Z6J|1|C1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Z6J_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0862
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Z6J|1|C1|U|112
6Z6J|1|C1|C|113
*
6Z6J|1|C1|G|267
6Z6J|1|C1|A|268
6Z6J|1|C1|G|269
6Z6J|1|C1|U|270
6Z6J|1|C1|C|271
6Z6J|1|C1|G|272
*
6Z6J|1|C1|C|293
6Z6J|1|C1|U|294
6Z6J|1|C1|A|295
6Z6J|1|C1|A|296
6Z6J|1|C1|G|297
6Z6J|1|C1|U|298
6Z6J|1|C1|G|299
*
6Z6J|1|C1|U|316
6Z6J|1|C1|A|317
6Z6J|1|C1|A|318
6Z6J|1|C1|A|319
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Li
- 60S ribosomal protein L36-A
Coloring options: