J4_6ZCE_002
3D structure
- PDB id
- 6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6ZCE|1|A|A|623, 6ZCE|1|A|A|1026, 6ZCE|1|A|C|1028, 6ZCE|1|A|U|1029, 6ZCE|1|A|A|1030, 6ZCE|1|A|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZCE_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1162
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZCE|1|A|A|622
6ZCE|1|A|A|623
6ZCE|1|A|G|624
*
6ZCE|1|A|C|975
6ZCE|1|A|G|976
6ZCE|1|A|A|977
6ZCE|1|A|A|978
6ZCE|1|A|A|979
6ZCE|1|A|G|980
*
6ZCE|1|A|C|1021
6ZCE|1|A|C|1022
6ZCE|1|A|A|1023
6ZCE|1|A|U|1024
6ZCE|1|A|A|1025
6ZCE|1|A|A|1026
6ZCE|1|A|A|1027
6ZCE|1|A|C|1028
6ZCE|1|A|U|1029
6ZCE|1|A|A|1030
6ZCE|1|A|U|1031
6ZCE|1|A|G|1032
*
6ZCE|1|A|U|1103
6ZCE|1|A|U|1104
Current chains
- Chain A
- 18S ribosomal RNA (1719-MER)
Nearby chains
- Chain O
- 40S ribosomal protein S13
- Chain X
- 40S ribosomal protein S22-A
- Chain Y
- 40S ribosomal protein S23-A
- Chain b
- 40S ribosomal protein S26-A
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: