J4_6ZJ3_001
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UC*GAGUAG*(PSU)GAAGAG*CAAG
- Length
- 19 nucleotides
- Bulged bases
- 6ZJ3|1|LC|A|503
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZJ3_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.3744
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.2
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
6ZJ3|1|LB|U|278
6ZJ3|1|LB|C|279
*
6ZJ3|1|LC|G|472
6ZJ3|1|LC|A|473
6ZJ3|1|LC|G|474
6ZJ3|1|LC|U|475
6ZJ3|1|LC|A|476
6ZJ3|1|LC|G|477
*
6ZJ3|1|LC|PSU|498
6ZJ3|1|LC|G|499
6ZJ3|1|LC|A|500
6ZJ3|1|LC|A|501
6ZJ3|1|LC|G|502
6ZJ3|1|LC|A|503
6ZJ3|1|LC|G|504
*
6ZJ3|1|LC|C|521
6ZJ3|1|LC|A|522
6ZJ3|1|LC|A|523
6ZJ3|1|LC|G|524
Current chains
- Chain LB
- LSU rRNA chain 1
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Ribosomal protein eL13
- Chain Lb
- Ribosomal protein eL15
- Chain Lp
- Ribosomal protein uL29
- Chain Lx
- Ribosomal protein eL36
Coloring options: