J4_6ZJ3_010

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

ACA*UGAGAG*CUGUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

6ZJ3|1|S1|C|727, 6ZJ3|1|S1|A|1425, 6ZJ3|1|S1|C|1427, 6ZJ3|1|S1|A|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZJ3_010 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.0897

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6ZJ3|1|S1|A|726
6ZJ3|1|S1|C|727
6ZJ3|1|S1|A|728
*
6ZJ3|1|S1|U|1372
6ZJ3|1|S1|G|1373
6ZJ3|1|S1|A|1374
6ZJ3|1|S1|G|1375
6ZJ3|1|S1|A|1376
6ZJ3|1|S1|G|1377
*
6ZJ3|1|S1|C|1420
6ZJ3|1|S1|U|1421
6ZJ3|1|S1|G|1422
6ZJ3|1|S1|U|1423
6ZJ3|1|S1|A|1424
6ZJ3|1|S1|A|1425
6ZJ3|1|S1|A|1426
6ZJ3|1|S1|C|1427
6ZJ3|1|S1|G|1428
6ZJ3|1|S1|A|1429
6ZJ3|1|S1|U|1430
6ZJ3|1|S1|G|1431
*
6ZJ3|1|S1|U|1513
6ZJ3|1|S1|U|1514

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain L5

Ribosomal protein eL42

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain SJ

Ribosomal protein uS8

Chain SO

Ribosomal protein uS11

Chain SP

Ribosomal protein uS12

Chain ST

Ribosomal protein uS15

Chain SU

Ribosomal protein uS17

Chain Sb

Ribosomal protein eS26