J4_6ZMT_001
3D structure
- PDB id
- 6ZMT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6ZMT|1|2|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZMT_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1073
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZMT|1|2|C|98
6ZMT|1|2|A|99
6ZMT|1|2|U|100
6ZMT|1|2|U|101
6ZMT|1|2|A|102
6ZMT|1|2|A|103
6ZMT|1|2|A|104
6ZMT|1|2|U|105
6ZMT|1|2|C|106
*
6ZMT|1|2|G|355
6ZMT|1|2|C|356
6ZMT|1|2|C|357
*
6ZMT|1|2|G|405
6ZMT|1|2|U|406
6ZMT|1|2|G|407
6ZMT|1|2|A|408
6ZMT|1|2|C|409
*
6ZMT|1|2|G|431
6ZMT|1|2|G|432
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain I
- 40S ribosomal protein S8
- Chain L
- 40S ribosomal protein S11
- Chain X
- 40S ribosomal protein S23
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
Coloring options: