J4_6ZQD_001
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6ZQD|1|D3|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZQD_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1345
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZQD|1|D3|C|99
6ZQD|1|D3|A|100
6ZQD|1|D3|U|101
6ZQD|1|D3|U|102
6ZQD|1|D3|A|103
6ZQD|1|D3|A|104
6ZQD|1|D3|A|105
6ZQD|1|D3|U|106
6ZQD|1|D3|C|107
*
6ZQD|1|D3|G|307
6ZQD|1|D3|C|308
6ZQD|1|D3|C|309
*
6ZQD|1|D3|G|357
6ZQD|1|D3|U|358
6ZQD|1|D3|A|359
6ZQD|1|D3|A|360
6ZQD|1|D3|C|361
*
6ZQD|1|D3|G|383
6ZQD|1|D3|G|384
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DE
- 40S ribosomal protein S4-A
- Chain DI
- 40S ribosomal protein S8-A
- Chain DL
- 40S ribosomal protein S11-A
- Chain DX
- 40S ribosomal protein S23-A
- Chain JD
- Probable ATP-dependent RNA helicase DHR1
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