J4_6ZQD_003
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6ZQD|1|D3|A|623, 6ZQD|1|D3|A|1026, 6ZQD|1|D3|U|1029, 6ZQD|1|D3|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZQD_003 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.2495
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZQD|1|D3|A|622
6ZQD|1|D3|A|623
6ZQD|1|D3|G|624
*
6ZQD|1|D3|C|975
6ZQD|1|D3|G|976
6ZQD|1|D3|A|977
6ZQD|1|D3|A|978
6ZQD|1|D3|A|979
6ZQD|1|D3|G|980
*
6ZQD|1|D3|C|1021
6ZQD|1|D3|C|1022
6ZQD|1|D3|A|1023
6ZQD|1|D3|U|1024
6ZQD|1|D3|A|1025
6ZQD|1|D3|A|1026
6ZQD|1|D3|A|1027
6ZQD|1|D3|C|1028
6ZQD|1|D3|U|1029
6ZQD|1|D3|A|1030
6ZQD|1|D3|U|1031
6ZQD|1|D3|G|1032
*
6ZQD|1|D3|U|1103
6ZQD|1|D3|U|1104
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DL
- 40S ribosomal protein S11-A
- Chain DN
- 40S ribosomal protein S13
- Chain DO
- 40S ribosomal protein S14-A
- Chain DW
- 40S ribosomal protein S22-A
- Chain DX
- 40S ribosomal protein S23-A
- Chain JL
- Dimethyladenosine transferase
- Chain UG
- U3 small nucleolar RNA-associated protein 7
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