3D structure

PDB id
6ZQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACUAUG*UU
Length
23 nucleotides
Bulged bases
6ZQE|1|D3|U|1029, 6ZQE|1|D3|U|1031
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZQE_003 not in the Motif Atlas
Homologous match to J4_8P9A_022
Geometric discrepancy: 0.2524
The information below is about J4_8P9A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

6ZQE|1|D3|A|622
6ZQE|1|D3|A|623
6ZQE|1|D3|G|624
*
6ZQE|1|D3|C|975
6ZQE|1|D3|G|976
6ZQE|1|D3|A|977
6ZQE|1|D3|A|978
6ZQE|1|D3|A|979
6ZQE|1|D3|G|980
*
6ZQE|1|D3|C|1021
6ZQE|1|D3|C|1022
6ZQE|1|D3|A|1023
6ZQE|1|D3|U|1024
6ZQE|1|D3|A|1025
6ZQE|1|D3|A|1026
6ZQE|1|D3|A|1027
6ZQE|1|D3|C|1028
6ZQE|1|D3|U|1029
6ZQE|1|D3|A|1030
6ZQE|1|D3|U|1031
6ZQE|1|D3|G|1032
*
6ZQE|1|D3|U|1103
6ZQE|1|D3|U|1104

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CL
Ribosome biogenesis protein BMS1
Chain DN
40S ribosomal protein S13
Chain DW
40S ribosomal protein S22-A
Chain DX
40S ribosomal protein S23-A
Chain JL
Dimethyladenosine transferase

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6128 s