J4_6ZTM_015
3D structure
- PDB id
- 6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in collided state without NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6ZTM|1|BA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZTM_015 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0776
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZTM|1|BA|C|2285
6ZTM|1|BA|G|2286
6ZTM|1|BA|A|2287
6ZTM|1|BA|A|2288
6ZTM|1|BA|G|2289
*
6ZTM|1|BA|U|2343
6ZTM|1|BA|U|2344
6ZTM|1|BA|G|2345
6ZTM|1|BA|A|2346
6ZTM|1|BA|C|2347
*
6ZTM|1|BA|G|2370
6ZTM|1|BA|G|2371
6ZTM|1|BA|U|2372
*
6ZTM|1|BA|A|2381
6ZTM|1|BA|G|2382
6ZTM|1|BA|G|2383
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L33
- Chain B5
- 50S ribosomal protein L35
- Chain BP
- 50S ribosomal protein L18
- Chain BX
- 50S ribosomal protein L27
Coloring options: