J4_6ZU5_006

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AGCAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZU5_006 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.2295

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZU5|1|L50|G|1615
6ZU5|1|L50|A|1616
6ZU5|1|L50|C|1617
6ZU5|1|L50|U|1618
6ZU5|1|L50|G|1619
*
6ZU5|1|L50|C|1631
6ZU5|1|L50|A|1632
6ZU5|1|L50|U|1633
6ZU5|1|L50|A|1634
6ZU5|1|L50|G|1635
*
6ZU5|1|L50|U|1655
6ZU5|1|L50|G|1656
6ZU5|1|L50|A|1657
6ZU5|1|L50|A|1658
6ZU5|1|L50|U|1659
*
6ZU5|1|L50|A|1786
6ZU5|1|L50|G|1787
6ZU5|1|L50|C|1788
6ZU5|1|L50|A|1789
6ZU5|1|L50|A|1790
6ZU5|1|L50|C|1791

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LA0

uL2

Chain LPP

eL43

Chain S60

Small subunit ribosomal RNA; SSU rRNA