J4_6ZVI_004
3D structure
- PDB id
- 6ZVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mbf1-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6ZVI|1|h|A|1026, 6ZVI|1|h|C|1028, 6ZVI|1|h|U|1029, 6ZVI|1|h|A|1030, 6ZVI|1|h|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZVI_004 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.393
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZVI|1|h|A|622
6ZVI|1|h|A|623
6ZVI|1|h|G|624
*
6ZVI|1|h|C|975
6ZVI|1|h|G|976
6ZVI|1|h|A|977
6ZVI|1|h|A|978
6ZVI|1|h|A|979
6ZVI|1|h|G|980
*
6ZVI|1|h|C|1021
6ZVI|1|h|C|1022
6ZVI|1|h|A|1023
6ZVI|1|h|U|1024
6ZVI|1|h|A|1025
6ZVI|1|h|A|1026
6ZVI|1|h|A|1027
6ZVI|1|h|C|1028
6ZVI|1|h|U|1029
6ZVI|1|h|A|1030
6ZVI|1|h|U|1031
6ZVI|1|h|G|1032
*
6ZVI|1|h|U|1103
6ZVI|1|h|U|1104
Current chains
- Chain h
- 18S rRNA
Nearby chains
- Chain E
- RPS22A isoform 1
- Chain H
- 40S ribosomal protein S23-A
- Chain K
- RPS26B isoform 1
- Chain t
- 40S ribosomal protein S11-A
- Chain v
- 40S ribosomal protein S13
- Chain w
- 40S ribosomal protein S14-B
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